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add_animation()
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Add mode bar button to rotate the plot |
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boxplot_trio()
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Boxplot to compare groups |
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calc_pvals()
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Calculate one-way test and pairwise tests |
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calc_stats_2x3()
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Calculate p-values for 2x3-way analysis |
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deseq_2x3()
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2 x 3 factor DESeq2 analysis |
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deseq_2x3_polar()
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Convert 2x3 design DESeq2 objects to a volcano3d object |
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deseq_polar()
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Convert DESeq2 objects to a volcano3d object |
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forest_plot() forest_plotly() forest_ggplot()
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Forest plot individual gene from 2x3 factor analysis |
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grid-class
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An S4 class to define the polar grid coordinates system. |
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polar_coords()
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Coordinates for Three Way Polar Plot |
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polar_coords_2x3()
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Coordinates for three way polar plot from 2x3 factor analysis |
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polar_grid()
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Grid required for 3D volcano plot and 2D radial plots |
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radial_ggplot()
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'Ggplot' for Three Way Polar Plot |
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radial_plotly()
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Three-way radial comparison Polar Plot (using plotly) |
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show_grid()
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Plots grid objects for inspection using plotly |
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significance_subset()
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Extract a subset population |
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syn_example_meta
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PEAC synovial sample data |
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syn_example_rld
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PEAC synovial gene expression data |
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volc3d-class
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An S4 class to define the polar coordinates. |
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volcano3D()
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Three-Dimensional Volcano Plot |
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voom_polar()
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Convert RNA-Seq count data to a volcano3d object using 'limma voom' |